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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.
ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

How to cite: Page, R. (2023). Document layout analysis. https://doi.org/10.59350/z574z-dcw92 Some notes to self on document layout analysis. I’m revisiting the problem of taking a PDF or a scanned document and determining its structure (for example, where is the title, abstract, bibliography, where are the figures and their captions, etc.). There are lots of papers on this topic, and lots of tools.

Published

One of the limitations of the Biodiversity Heritage Library (BHL) is that, unlike say Google Books, its search functions are limited to searching metadata (e.g., book and article titles) and taxonomic names. It doesn't support full-text search, by which I mean you can't just type in the name of a locality, specimen code, or a phrase and expect to get back much in the way of results.

Published

A while ago I posted BHL to PDF workflow which was a sketch of a work flow to generate clean, searchable PDFs from Biodiversity Heritage Library (BHL) content: I've made some progress on putting this together, as well as expanded the goal somewhat. In fact, there are several goals:BioStor articles need to be archived somewhere. At the moment they live on my server, and metadata is also served by BHL (as the "parts" you see in a scanned volume).

Published

.bbpBox24379929555 {background:url(http://s.twimg.com/a/1283555538/images/themes/theme1/bg.png) #C0DEED;padding:20px;} p.bbpTweet{background:#fff;padding:10px 12px 10px 12px;margin:0;min-height:48px;color:#000;font-size:18px !important;line-height:22px;-moz-border-radius:5px;-webkit-border-radius:5px} p.bbpTweet span.metadata{display:block;width:100%;clear:both;margin-top:8px;padding-top:12px;height:40px;border-top:1px solid #fff;border-top:1px

Published

This post is simply a quick note on some experiments with DjVu that I haven't finished. Much of BHL's content is available as DjVu files, which contain both the scanned images and OCR text, complete with co-ordinates of each piece of text. This means that it would, in principle, be trivial to lay out the bounding boxes of each text element on a web page.