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bjoern.brembs.blog

The blog of neurobiologist Björn Brembs
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Author Björn Brembs

We are looking for a PhD student interested in the functional, molecular and structural profile of neuronal circuits underlying learning, memory and behavior. In a 30-year research effort (lay summary, paper), we have recently identified a new gene (atypical PKC, aPKC) necessary for a form of motor learning in the fruit fly Drosophila and in which neurons it is required.

Published
Author Björn Brembs

Or let’s think a a few sizes smaller and imagine a renowned pulmonologist taking the, say, “Marlboro Endowed Chair” in the Mayo Clinic’s Pulmonary Medicine Division, sponsored by Philip Morris. What would they have to endure and how much credibility would they and the institutions lose? Undoubtedly, the foul stench of corruption and hypocrisy would be difficult to counter.

Published
Author Björn Brembs

More and more experts are calling for the broken and destructive academic journal system to be replaced with modern solutions. This post summarizes why and how this task can now be accomplished. It was first published in German on the blog of journalist Jan-Martin Wiarda. Front cover of the now-vanished Australasian Journal of Bone & Joint Medicine . Source: Scan from the-scientist.com website

Published
Author Björn Brembs

On the occasion of the first “BigDataDay” at our university, I have summarized on the below poster our two main efforts to automate the publication of our tiny raw data. On the left is our project automating Buridan data deposition at FigShare using the ROpenSci plugin and the consequence of just sending the links to the data and the evaluation code to a publisher, instead of pixel-based figures, when submitting a paper.

Published
Author Björn Brembs

For the last few years, we have been working on the development of new Drosophila flight simulators. Now, finally, we are reaching a stage where we are starting to think about how to store the data we’ll be capturing both with Open Science in mind, but particularly keeping in mind that this will likely be the final major overhaul of this kind of data until I retire in 20 years.

Published
Author Björn Brembs

Starting this year, I will stop traveling to any speaking engagements on open science (or, more generally, infrastructure reform), as long as these events do not entail a clear goal for action. I have several reasons for this decision, most of them boil down to a cost/benefit estimate. The time spent traveling does not seem worth the hardly noticeable benefits any more. I got involved in Open Science more than 10 years ago.

Published
Author Björn Brembs

Why our Open Data project worked, (and how Decorum can allay our fears of Open Data). I am honored to Guest Post on Björn’s blog and excited about  the interest in our work from Björn’s response to Dorothy Bishop’s first post. As corresponding author on our paper, I will provide more context to our successful Open Data experience with Björn’s and Casey’s labs.

Published
Author Björn Brembs

For ages I have been planning to collect some of the main aspects I would like to see improved in an upgrade to the disaster we so euphemistically call an academic publishing system. In this post I’ll try to briefly sketch some of the main issues, from several different perspectives. As a reader: I’d like to get a newspaper each morning that tells me about the latest developments, both in terms of general science news (aka.