Scientific workflow software such as Taverna, Knime and Pipeline Pilot can overcome interoperability issues relating to the access of tools and data format conversions. Such tasks are automatically handled by the data processing pipeline during its enactment by the workflow software. Galaxy is another workflow system, and its annual conference was held last month at the University of Chicago.
Type any scientific term into any search engine and its pretty much guaranteed that a Wikipedia article will be the first hit.
In a busy summer for meetings, this month we attended and presented at Bio-IT World Asia conference in Singapore. In this era of more globalized biology, to celebrate the 10th anniversary of the usually Boston based conference series, with Bio-IT World substituted their usual New England lobster for Chili Crab and heading east.
Of the of the many issues needing addressing in this era of the so-called “data deluge” (apologies genomics bingo), on top of the well documented difficulties in computing power, bandwidth and storage keeping pace with data production, less attention has been paid on the efforts required to present and package this biological information to users.
To tie in with this week’s Genomic Standards Consortium (GSC) meeting in Shenzhen, GigaScience is launching a call for submissions to a thematic series of discussion and research from the conference and wider community highlighting best practice in genomics research. As the 13th meeting of the GSC, the topic this year is “Genomes to Interactions to Communities to Models“ – all areas key to the scope of the journal.
So that’s ISMB over for another year. The worlds computational biologists are now sleeping off their Austrian wine and Sacher Torte hangovers on flights back home, hopefully inspired and brimming with fresh ideas for the next year. On the whole it seemed a productive and positive meeting, and whilst personal perspectives always differ depending on the tracks attended, there did seem to be several recurring themes.
