3000 Rice Genome Sequences Made Publicly Available on World Hunger Day Yesterday marked the publication in GigaScience of the first data from the 3,000 Rice Genomes Project, a collaboration between the Chinese Academy of Agricultural Sciences (CAAS), the International Rice Research Institute (IRRI), and BGI; as well as a commentary from the Directors of these institutes outlining the goals of this ambitious project.

As big proponents of Open Data, on top of the many diverse datasets associated with GigaScience papers in our integrated GigaDB database, we are continuing to fill it with datasets produced by our BGI hosts.

A lot has already been written about last months Assemblathon2 paper in GigaScience (see the growing list of articles here), but for the box-set completists interested in squeezing every last bit of insight into the project and how it was put together, there was a lot of additional material left over from the recent Biome Q&A with Keith Bradnam that we thought it could be useful to post in a (hopefully final) blog posting.

Biggest ever contest to put genome assemblers through their paces If you haven’t caught it yet, the largest systematic assessment the process of genome assembly carried out to date has been published this week in GigaScience . The second Assemblathon competition saw 21 teams submit 43 entries based on data from three different unassembled parrot, cichlid fish, and boa constrictor genomes sequenced using three different

Singapore – a wonderful city of diverse cultures and culinary affair, is not just about the infamous chilli crab or signature cocktail, Singapore Sling, but from the 13-19 April the vibrant country plays host to one of the largest meetings in genetics and genomics.

Following from our previous blog posting, here we profile and interview Dr Xin Zhou, lead author of our recent “squishome” insect goo metabarcoding paper.

Insect goo aids biodiversity research Apologies to Jonathan Eisen (see Badomics in the journal), but today in GigaScience we publish a new “squishomics” approach for assessing and understanding biodiversity, using the slightly wacky sounding method of combining DNA-soup made from crushed-up insects and the latest sequencing technology.

Bye Bye Bluebells Bluebell woods, the dense carpets of violet–blue flowers found in ancient woodland are a spectacular and famous springtime sight in Britain, but this picture postcard scene is threatened as never before.

New research in GigaScience on the genome of the Wuzhishan minipig The availability of a high quality reference genome sequence for a species is extremely important in the deeper understanding of its biology, evolution, and comparative genomics.

In the midst of a busy few weeks of European meetings, GigaScience is currently in Basel, where ECCB 2012 (the European Conference of Computational Biology) has just ended. Usually overshadowed by its bigger sibling: the ISMB (particularly when both meetings are in Europe and co-hosted), this was the first time that I had attended the stand-alone meeting and it more than justified being a stand-alone event.