Image via Wikipedia I’ve been interested for some time in capturing information and the context in which that information is created in the lab. The question of how to build an efficient and useable laboratory recording system is fundamentally one of how much information is necessary to record and how much of that can be recorded while bothering the researcher themselves as little as possible.
The rationale behind open approaches is the way it enables you to make unexpected connections and to find otherwise hidden shortcuts. People, data, code, and expertise can be more effectively connected when the information is out there and discoverable. Here I wanted to document a little collaboration that was sparked on twitter and carried through using an entirely open toolset.
This is the second of two posts discussing the talk I gave at the Science 2.0 Symposium organized by Greg Wilson in Toronto in July. As I described in the last post Jon Udell pulled out the two key points from my talk and tweeted them.
When it comes to getting data up on the web, I am actually a great optimist. I think things are moving in the right direction and with high profile people like Tim Berners-Lee making the case, the with meme of “Linked Data” spreading, and a steadily improving set of tools and interfaces that make all the complexities of RDF, OWL, OAI-ORE, and other standards disappear for the average user, there is a real sense that this might come together.
At Science Online 09 and at the Smi Electronic Laboratory Notebook meeting in London later in January I talked about how laboratory notebooks might evolve. At Science Online 09 the session was about Open Notebook Science and here I wanted to take the idea of what a “web native†lab record could look like and show that if you go down this road you will get the most out if you are open.
We are in the slow process of gearing up within my group at RAL to adopting the Chemtools LaBLog system and in the process moving properly to an Open Notebook status. This has taken much longer than I had hoped but there have been some interesting lessons along the way. Here I want to think a bit about a problem that has been troubling me for a while.
Two rather exciting things are happening at the moment. Firstly we have finally got the LaBLog system up and running at RAL (http://biolab.isis.rl.ac.uk). Not a lot is happening there yet but we are gradually working up to a full Open Notebook status, starting by introducing people to the system bit by bit.
Something that has been bothering me for quite some time fell into place for me in the last few weeks. I had always been slightly confused by my reaction to the fact that on UsefulChem Jean-Claude actively works to improve and polish the description of the experiments on the wiki.
…is knowing what you mean… I posted last week about the spontaneous CMLReact hackfest held around Peter Murray-Rust’s dining room table the day after Science Blogging in London.
An update on the Workshop that I announced previously. We have a number of people confirmed to come down and I need to start firming up numbers. I will be emailing a few people over the weekend so sorry if you get this via more than one route. The plan of attack remains as follows: Meet on evening of Sunday 31 August in Southampton, most likely at a bar/restaurant near the University to coordinate/organise the details of sessions.