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GigaBlog

GigaBlog
Data driven blogging from the GigaScience editors
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GigaBlog is now archived in Rogue Scholar, a new service that provides what it calls “science blogging on steroids” through including full-text search, long-term archiving, DOIs and metadata for science blogs such as ours. While this July we celebrated the 11 th anniversary of the launch of our first articles at ISMB in Lyon, it was actually the 12 th anniversary of the launch of GigaBlog, the blog of GigaScience

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*Series Editors: Jue Ruan (Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences) and Fritz J Sedlazeck (Human Genome Sequencing Center, Baylor College of Medicine) *   While the first draft of the Human Genome was announced back in June 2000 and declared complete in April 2003, it took 20 years for the publication of the first complete, gapless sequence of a human genome in March 2022.

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It was a year to remember, for more than one reason: 2022 marked the 10th anniversary of GigaScience ’s launch. The journal’s younger sibling GigaByte got an award and continued to innovate with living documents and its first trilingual article. And we published lots of memorable research, featuring, for example, a giant tortoise and 26 deadly snakes.

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In another first for the novel GigaByte publication platform developed by River Valley Technologies, this week marks the first time multilingual articles have been simultaneously published in English, Spanish and Ukrainian Open Science has gained momentum over the past decade, and embracing that, GigaScience Press has aimed at pushing scientific publishing beyond just making articles open access toward making the entire process open

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GigaByte Journal wins the ALPSP Innovation Award for their interactive articles and tools aimed at fulfilling the UNESCO Recommendation on Open Science We at GigaScience Press are very pleased to announce that our newest journal GigaByte has won the 2022 ALPSP Award for Innovation in Scholarly Publishing.

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This week is International Open Access Week, and with the theme “It Matters How We Open Knowledge: Building Structural Equity”. This aims at highlighting the individual and collective action required alongside the decisions, actions, and investments in knowledge sharing to ensure that equity is foundational.

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Out today in GigaScience is ShinyLearner, a new tool to make it easier to perform benchmark comparisons of classification algorithms. This tool stands out by making this process super systematic and reproducible, and despite needing to interface with many different libraries and languages it uses software containers (and a CodeOcean demo) so end users don’t need to worry about this complexity.

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At GigaScience as our focus is on reproducibility rather than subjective impact, it can be challenging at times to judge this in our papers. Targeting the “bleeding edge” of data-driven research, more and more of our papers utilise technologies, such as Jupyter notebooks, Virtual Machines, and Containers such as Docker.