Messages de Rogue Scholar

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Publié in iPhylo

Following on from the discussion of the African chameleon data, I've started to explore Angelique Hjarding's data in more detail. The data is available from figshare (doi:10.6084/m9.figshare.1141858), so I've grabbed a copy and put it in github. Several things are immediately apparent.There is a lot of ungeoreferenced data.

Publié in iPhylo

This is guest post by Angelique Hjarding in response to discussion on this blog about the paper below.Thank you for highlighting our recent publication and for the very interesting comments. We wanted to take the opportunity to address some of the issues brought up in both your review and from reader comments. One of the most important issues that has been raised is the sharing of cleaned and vetted datasets.

Publié in iPhylo

If we view biodiversity data as part of the "biodiversity knowledge graph" then specimens are a fairly central feature of that graph. I'm looking at ways to link specimens to sequences, taxa, publications, etc., and doing this across multiple data providers.

Publié in iPhylo

I stumbled across this paper (found on the GBIF Public Library):The first sentence of the abstract makes the paper sound a bit of a slog to read, but actually it's a great fun, full of pithy comments on the state of digital humanities. Almost all of this is highly relevant to mobilising natural history data.

Publié in iPhylo

Today I managed to publish some data from a GitHub repository directly to GBIF. Within a few minutes (and with Tim Robertson on hand via Skype to debug a few glitches) the data was automatically indexed by GBIF and its maps updated. You can see the data I uploaded here.The data I uploaded came from this paper:This is the data I used to build the geophylogeny for Banza using Google Earth.