Egon Willighagen, at Uppsala University, has pioneered the use of object properties from CiTO, the Citation Typing Ontology, to characterize bibliographic citations in CiteULike, the free service for managing and discovering scholarly references.  Indeed, it was his use case that persuaded me of the need to generalize CiTO to include indirect citations.

This blog post is to introduce the first four ontologies of SPAR, the Semantic Publishing and Referencing Ontologies, an integrated ecosystem of generic ontologies shown diagrammatically in the ‘flower’ diagram below (Figure 1). The ontologies can be used either individually or in conjunction, as need dictates.

The second installment of the paper (first part here) where I discuss building tools for Open (or indeed any) Science. Tools for open science – building around the needs of scientists It is the rapid expansion and development of tools that are loosely categorised under the banner of ‘Web2.0’ or ‘Read-write web’ that makes the sharing of research material available.

As of April 3, I will be working as postdoc in the group of Christoph Steinbeck at the Cologne University BioInformatics Center, or simply CUBIC, for a year. Though no exact plans have been decided upon, the work will include CDK, CML, ontologies, Bioclipse, semantic web technologies, Jmol, and other interesting things. Research areas will at least include QSAR, but I hope to touch bits of bioinformatics too.