Each year about this time, as I ponder what to devote my time on in the coming year, I get exasperated and frustrated that each year will be like the previous one, and biodiversity informatics will seem no closer to getting its act together. Sure, we are putting more and more data online, but we are no closer to linking this stuff together, or building things that people can use to do cool science with.
The journal Mycokeys has published the following paper: This paper contains a diagram that seems innocuous enough but which I find worrying: The nodes in the graph are "biodiversity megascience platforms", the edges are "cross-linkages and data exchange". What bothers me is that if you view biodiversity informatics through this lens then the relationships among these projects becomes the focus.
Over the weekend I saw this great tweet: Personal publishing policy for the PhD: always submit to http://t.co/dE2HMGlP and only publish (as 1st author) in arXiv-friendly journals. — P Desjardins-Proulx (@phdpqc) July 14, 2012 by Philippe Desjardins-Proulx and was pleased to see yet another actively open young scientist.
It’s that time of year again when the new Impact Factor values are released. This is such a big deal to a lot of folks that it’s pretty hard to avoid hearing about it. We’re not the sort of folks that object to the use of impact factors in general – we are scientists after all and part of being a scientist is quantifying things.
I'll keep this short: LSIDs suck because they are so hard to set up that many LSIDs don't actually work. Because of this there seems to be no shame in publishing "fake" LSIDs (LSIDs that look like LSIDs but which don't resolve using the LSID protocol). Hey, it's hard work, so let's just stick them on a web page but not actually make them resolvable.
UPDATE: As of April 2012 Wiley has now changed their feeds to include the full list of authors. Thanks to Brady Allred for letting us know. An open letter to John Wiley & Sons Inc. Dear Wiley, I like a lot of things that you do, but a few months ago you quietly changed your RSS feeds in a way that is both disrespectful and frankly not good for your business.
Some days I really wonder whether the bureaucratic infrastructure at institutions of higher education has any idea whatsoever that their job is to support the research and teaching missions of the university.
I've been playing a little with TreeBASE II, and the more I do the more I want to pull my hair out. Broken URLs The old TreeBASE had a URL API, which databases such as NCBI made use of. For example, the NCBI page for Amphibolurus nobbi has a link to this taxon in TreeBASE.
It's Friday, so time for either a folly or a rant. BHL have put another user survey into the field http://www.surveymonkey.com/s/BHLsurvey. I loathe user surveys.
If you don’t have an easily accessible RSS feed available (and by easily accessible I mean in the browser’s address bar on your journal’s main page) for your journal’s Table of Contents (TOCs), there is a certain class of readers who will not keep track of you TOCs.