Published April 10, 2006 | https://doi.org/10.59350/7nz8x-a7q09

Getting Jmol's 'cartoon on' to work in Bioclipse

Creators & Contributors

Bioclipse 1.0 is to be released in May, and the cartoon on script command is still not working in the Jmol viewer. For those who do not know yet, Bioclipse is a cool Eclipse RCP based Java chemo-and bioinformatics workbench. To have a better idea what goes on inside Bioclipse, I wrote a new BioPolymer tree to show me the strands in the protein. After Ola wrote code to show properties for IChemObject's, I extended it with PDB properties for the atoms, strands and monomers.

The contents of the ChemTree view in the middle and the Properties view below that look fine:

So I'll have to dig a bit further.

Additional details

Description

Bioclipse 1.0 is to be released in May, and the cartoon on script command is still not working in the Jmol viewer. For those who do not know yet, Bioclipse is a cool Eclipse RCP based Java chemo-and bioinformatics workbench. To have a better idea what goes on inside Bioclipse, I wrote a new BioPolymer tree to show me the strands in the protein.

Identifiers

UUID
abbd2bd4-0531-4a51-8b44-975f853ebd8a
GUID
https://doi.org/10.59350/7nz8x-a7q09
URL
https://chem-bla-ics.linkedchemistry.info/2006/04/10/getting-jmols-cartoon-on-to-work-in.html

Dates

Issued
2006-04-10T00:00:00
Updated
2024-05-26T00:00:00