With this blog post, I show how to use the mcbette R packagein an informal way.A more formal introduction on mcbettecan be found in the Journal of Open Source Science ¹ .After introducing a concrete problem, I will show how mcbettecan be used to solve it. After discussing mcbette, I will conclude withwhy I think rOpenSci is important and how enjoyablemy experiences have been so far.The problem Imagine you are a field biologist.

The data.table package enables high-performance extended functionality for data tables in R. treedata.table is a wrapperfor data.table for phylogenetic analyses that matches a phylogeny to the data.table, and preserves matching during data.table operations.Using the data.table package greatly increases analysis reproducibility and the efficiency of data manipulation operations over other ways of performing similar tasks inbase R, enabling

This post is about my new preprint I’ve uploaded to PeerJ PrePrints: Mounce, R. (2015) Dark Research: information content in some paywalled research papers is not easily discoverable online. PeerJ PrePrints Needless to say, it’s not peer-reviewed yet but you can change that by commenting on it at the excellent PeerJ PrePrints website. All feedback is welcome.

Recently I had the opportunity to collaborate on an extremely timely paper on data sharing and data re-use in phylogenetics, as part of the continuing MIAPA (Minimal Information for a Phylogenetic Analysis) working group project:

just a quick post… I’m pretty shocked at the poor indexing service given by Thompson Reuters Web of Knowledge (or ISI Web of Science as you might know it). I’ve unashamedly bashed them before and I’ll bash them again here.

I realise thus far, I may not have explained too clearly exactly what I’m doing for my Panton fellowship. With this post I shall attempt to remedy this and shed a little more light on what I’ve been doing lately.

Building upon the instructions given here and here I thought I’d write up one of the many useful things Pablo Goloboff kindly taught us at the TNT scripting workshop after the Hennig XXXI meeting. It’s actually not the easiest thing to setup if you’re using Ubuntu… Pablo had to help me do it – I would never have got it up and running on my own.

It’s that time again… time to write my monthly Panton Fellowship update. The trouble is, as I start writing this it’s 6am (London, UK). I arrived back from the Hennig XXXI meeting (University of California Riverside) after a long flight yesterday and am supremely jetlagged. I still can’t decide whether this is awesome (I can get more work done, by waking up earlier), or terrible as I can’t keep my eyes open past 9pm at night!

I’m really pleased this new Open Access paper has just been published.

This is a re-post of something I was invited to write to sum-up my experiences at OKCon 2011. The original post can be viewed here on the official OKFN Open Science blog.