In the nineties, the Belfast Naturalists’ Field Club extensively surveyed the urban flora of Belfast, resulting in a book, Urban Flora of Belfast . Many plants new to Down and Antrim were found, and most of these were new to Ireland as well. This was a three-year effort involving some thirty-one recorders.

Over two years ago I wrote about the unstoppable tide of uninformation that follows the rise of large language models. With ChatGPT and other models bringing large-scale text generation to the masses, I want to register a dystopian prediction.

The construction of gothic cathedrals like Chartres was governed not by blueprints but by “talk, tradition, and templates” — at least that is what Turnbull has compellingly argued. When you come across such a neatly alliterative triad, there are two ways you can go. You can adopt the terms in an unexamined way and rely on their alliterative power.

Yes, we’ve touched on a similar subject in a previous tutorial, but today I want to make a really important point about writing anything of substance, whether it’s a scientific paper, a novel or the manual for a piece of software. It’s this: you have to actually do the work. And the way you do that is by first doing a bit of the work, then doing a bit more, and iterating until it’s all done.

Many aspects of scholarly publishing are presently in flux. But for most journals the process of getting a paper published remains essentially the same as decades ago, the main change being that documents are sent electronically rather than by post. It begins with the corresponding author of the paper submitting a manuscript — sometimes, though not often, in response to an invitation from a journal editor.

Long-time readers might remember the short-lived series on quantixed called The Digital Cell. There is a reason why I stopped these posts, which I can now reveal… The Digital Cell will soon be a book! Published by Cold Spring Harbor Laboratory Press, The Digital Cell is a handbook to help cell and developmental biologists get to grips with programming, image analysis, statistics and much more.

Here’s a quick tech tip. We’ve been writing papers in TeX recently, using Overleaf as a way to write collaboratively. This works great but sometimes, a Word file is required by the publisher. So how do you convert from one to the other quickly and with the least hassle? If you Google this question (as I did), you will find a number of suggestions which vary in the amount of effort required. Methods include latex2rtf or pandoc.

I was recently an external examiner for a PhD viva in Cambridge. As we were wrapping up, I asked “if you were to do it all again, what would you do differently?”. It’s one of my stock questions and normally the candidate says “oh I’d do it so much quicker!” or something similar. However, this time I got a surprise. “I would write my thesis in LaTeX!”, was the reply. As a recent convert to LaTeX I could see where she was coming from.

How long does it take to publish a paper? I posted the picture below on Twitter to show how long it takes for us to publish a paper. The answer is 235 days. This is the median time from submission at the first journal to publication online or in print. The data are from our last ten papers. The infographic proved popular with 40 retweets and 22 favourites. It was pointed out to me that the a few things would improve this visualisation: 1.

As I announced on Twitter about a week ago, I am now making all of my grant proposals open access. To start with I’m doing this for all of my sole-PI proposals, because I don’t have to convince my collaborators to participate in this rather aggressively open style of science. At the moment this includes three funded proposals: my NSF Postdoctoral Fellowship proposal, an associated Research Starter Grant proposal, and my NSF CAREER award.