Messaggi di Rogue Scholar

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Pubblicato in GigaBlog

This week in GigaScience we published research revealing a previously hidden diversity of symbiotic bacteria from the genus Rickettsia , spanning a wide range of arthropod hosts. Using accidentally amplified sequence data from a barcoding database as a starting point, the results will help to better understand the co-evolution of these intimate symbioses.

Pubblicato in bjoern.brembs.blog
Autore Björn Brembs

The academic journal publishing system sure feels all too often a bit like a sinking boat: we have a reproducibility leak an affordability leak a functionality leak a data leak a code leak an interoperability leak a discoverability leak a peer-review leak a long-term preservation leak a link rot leak an evaluation/assessment leak a data visualization leak … … … and even a tiny access leak still remains even after 30 years of trying to fix it.

Pubblicato in GigaBlog

Open Data in the Third Dimension Data are not just ephemeral units of magnetisation sitting on computer hard drives. The linking of the word to storable computer information only goes back to the mid-20 th century, but the use of the latin word data in English goes back to at least the 17 th Century.

Pubblicato in GigaBlog

GigaScience Press and River Valley Technologies, with the help of Stencila, launch their first interactive Executable Research Article from their new scientific journal, GigaByte.

Pubblicato in GigaBlog

The SAMtools suite of tools for manipulating sequencing data one of the most ubiquitous tools in bioinformatics, as the “glue” holding together much of bioinformatics we see it used in pretty much every genomics pipeline we are submitted.

Pubblicato in GigaBlog

The International Ukraine Genetic Diversity Project finds a quarter of the genetic variation in Europe, dramatically increasing information on population diversity and medical genetic variation. Today, the largest study of genetic diversity in Ukraine was published in GigaScience . The project was an international effort, bringing together researchers in Ukraine, the US and China and is the first fruits of this collaboration to

Pubblicato in bjoern.brembs.blog
Autore Björn Brembs

For a few years now I have been arguing that in order to accomplish change in scholarly infrastructure, it likely is an inefficient plan by funding agencies to mandate the least powerful players in the game, authors (i.e., their grant recipients). The legacy publishing system still exists because institutions pay for its components, publishers.