Glueing BioMoby services together with JavaScript in Bioclipse
Ola has been doing a good job of integrating BioMoby support into Bioclipse. Earlier he completed a GUI for running BioMOBY services, and added more recently a JavaScript wrapper too, using the Rhino plugin developed by Johannes.
For example:
console = Packages.net.bioclipse.util.BioclipseConsole;
moby = Packages.net.bioclipse.biomoby.ui.scripts.MobyServiceScripting;
biojava = Packages.net.bioclipse.biojava.scripts.BioJavaScripting;
prot=moby.downloadGenbank("NCBI_GI","111076");
seq=biojava.parseString(prot);
fasta=biojava.toFasta(seq);
console.writeToConsole(fasta);
Today, he explained how to create convenience JavaScript shortcuts, to reduce the typing.
Screenshots and status of the Bioclipse-BioMoby work is available from the wiki.
Additional details
Description
Ola has been doing a good job of integrating BioMoby support into Bioclipse. Earlier he completed a GUI for running BioMOBY services, and added more recently a JavaScript wrapper too, using the Rhino plugin developed by Johannes.
Identifiers
- GUID
- https://doi.org/10.59350/vkwhn-4tw77
- URL
- https://chem-bla-ics.linkedchemistry.info/2007/11/05/glueing-biomoby-services-together-with.html
Dates
- Issued
-
2007-11-05T01:00:00
- Updated
-
2007-11-05T01:00:00