Published February 19, 2007 | https://doi.org/10.59350/bpnj5-40e86

Pimp my JavaDoc

Creators & Contributors

Jörg's PhD book Data Mining und Graph Mining auf molekularen Graphen - Chemoinformatik und molekulare Kodierungen für ADME/Tox-QSAR-Analysen has a dump of the JavaDoc of the GroupContributionPredictor in JOELib (Figure 3.2, page 43). There are two nice things to the shown JavaDoc: 1. it has links to Wikipedia; 2. it has a Further Reading section.

Now, the CDK already links to a bibliography for some time now. However, it would just give a BibTex key, and link to a webpage created from a BibTeXML file in which we store all references (cdk/doc/refs/cheminf.bibx). Putting the full citation inline makes the JavaDoc more informative, but I wanted to preserve the @cdk.cite mechanism we were using.

This weekend I hacked up a nice CDKCiteDoclet that would read the BibTeXML file with XOM, and convert items to HTML to put into the pimped JavaDoc:

Additional details

Description

Jörg's PhD book Data Mining und Graph Mining auf molekularen Graphen - Chemoinformatik und molekulare Kodierungen für ADME/Tox-QSAR-Analysen has a dump of the JavaDoc of the GroupContributionPredictor in JOELib (Figure 3.2, page 43). There are two nice things to the shown JavaDoc: 1. it has links to Wikipedia; 2. it has a Further Reading section.

Identifiers

UUID
cf7f7aa4-aea5-421d-8b79-e4d49e254da6
GUID
https://doi.org/10.59350/bpnj5-40e86
URL
https://chem-bla-ics.linkedchemistry.info/2007/02/19/pimp-my-javadoc.html

Dates

Issued
2007-02-19T00:00:00
Updated
2025-02-15T00:00:00